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Category: Publications

Bridging the gap between R and Python in bulk transcriptomic data analysis with InMoose

inmoose-pca-batch-effect-correction-logfc-correlation

We present the differential expression features of InMoose, a Python implementation of R tools limma, edgeR, and DESeq2.

Accelerating antigen-targeting therapy discovery with a scalable pan-cancer bioinformatics platform

Poster on a scalable bioinformatics platform for pan-cancer antigen-targeting therapy discovery

We developed a pan-cancer bioinformatics platform combining patient data with extensive biological and pharmaceutical knowledge.

The evolving landscape of cancer transcriptomics data

Scientific poster on the evolving landscape of transcriptomics data presented at AACR

We developed a pan-cancer bioinformatics platform combining patient data with extensive biological and pharmaceutical knowledge.

InMoose: the Integrated Open Source Python Package for Multi-omic Analyses

Poster on InMoose, an open source Python package for integrated multi-omic data analysis

We developed a pan-cancer bioinformatics platform combining patient data with extensive biological and pharmaceutical knowledge.

Empirical Bayesian batch effect correction for single-cell RNA-seq data

Poster on correcting scRNA-seq batch effects using an Empirical Bayes approach

We developed a pan-cancer bioinformatics platform combining patient data with extensive biological and pharmaceutical knowledge.

Machine-learning-based inference of clinical metadata from gene expression data

Poster at AACR on ML-based inference of clinical metadata from gene expression

We developed a pan-cancer bioinformatics platform combining patient data with extensive biological and pharmaceutical knowledge.

Bulk transcriptomic analysis with InMoose, the integrated multi-omic open-source environment in Python

Bulk Transcriptomic Analysis with InMoose

We present InMoose, an open-source Python environment for omic data analysis, showcasing its capabilities in bulk transcriptomics.

Differential expression analysis with InMoose, the integrated multi-omic open-source environment in Python

Differential Expression Analysis with InMoose

We present the differential expression features of InMoose, a Python implementation of R tools limma, edgeR, and DESeq2.

Transforming public patient omic data into precision oncology targets

Transforming public patient omic data into precision oncology targets

We present a scalable, data-driven platform for pan-cancer antigen target discovery leveraging the untapped potential of public transcriptomic data, along with extensive biological and pharmaceutical knowledge.

A scalable pancancer antigen target discovery platform for precision oncology

Scalable pancancer antigen target discovery platform for precision oncology

We developed a pan-cancer bioinformatics platform combining patient data with extensive biological and pharmaceutical knowledge.

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